Menu

2014

2014

Aalhus, J.L., López-Campos, Ó., Prieto, N., Rodas-Gonzalez, A.R., Dugan, M.E.R., Uttaro, B., Juárez, M. (2014) Review: Canadian beef grading – Opportunities to identify carcass and meat quality traits valued by consumers. Canadian Journal of Animal Science 94: 1-12. IF 0.724 Citations 4.

 

Abo-Ismail, M.K., Vander Voort, G., Squires, J.J., Swanson, K.C., Mandell, I.B., Liao, X., Stothard, P., Moore, S., Plastow, G., Miller, S.P. (2014) Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle. BMC Genetics 15: 14. IF 2.152 Citations 7.

 

Akanno, E.C., Plastow, G., Woodward, B.W., Bauck, S., Okut, H., Wu, X.L., Sun, C., Aalhus, J.L., Moore, S.S., Miller, S.P., Wang, Z., Basarab, J.A. (2014) Reliability of molecular breeding values for Warner-Bratzler shear force and carcass traits of beef cattle-An independent validation study. Journal of Animal Science 92: 2896-2904. IF 2.014 Citations 9.

 

Bahitham, W., Liao, X., Peng, F., Bamforth, F., Chan, A., Mason, A., Stone, B., Stothard, P., Sergi, C. (2014) Mitochondriome and cholangiocellular carcinoma. PLoS One 9: e104694. IF 3.54 Citations 4.

 

Bao, H., Kommadath, A., Plastow, G.S., Tuggle, C.K., Guan, L.L., Stothard, P. (2014) MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. PLoS ONE 9: e94352. IF 3.54 Citations 8.

 

Berry, D.P., Coffey, M.P., Pryce, J.E., de Haas, Y., Løvendahl, P., Krattenmacher, N., Crowley, J.J., Wang, Z., Spurlock, D., Weigel, K., Macdonald, K., Veerkamp. R.F. (2014) International genetic evaluations for feed intake in dairy cattle through the collation of data from multiple sources. Journal of Dairy Science 97: 3894-3905. IF 2.408 Citations 27.

 

Berry, D.P., Kennedy, E., and Crowley, J.J. (2014) Genetics of Feed Intake and Efficiency. In The Genetics of Cattle, Second Edition. CABI publishers. ISBN: 1780642210.

 

Chen, L., Li, C., Miller, S., Schenkel, F. (2014) Multi-population genomic prediction using a multi-task Bayesian learning model. BMC Genetics 15: 53. IF 2.152 Citations 8.

 

Chen, L., Li, C., Sargolzaei, M., Schenkel, F. (2014) Impact of genotype imputation on the performance of GBLUP and Bayesian methods for genomic prediction. PLoS ONE 9: e101544. IF 3.54 Citations 9.

 

Chen, L, Mao, F., Crews Jr., D.H., Vinsky, M., Li., C. (2014) Phenotypic and genetic relationships of feeding behavior with feed intake, growth performance, feed efficiency and carcass merit traits in Angus and Charolais steers. Journal of Animal Science 92: 974-983. IF 2.014 Citations 6.

 

Choi, I., Bao, H., Kommadath, A., Hosseini, A., Sun, X., Meng, Y., Stothard, P., Plastow, G.S., Tuggle, C.K., Reecy, J.M., Fritz-Waters, E., Abrams, S.M., Lunney, J.K., Guan, L.L. (2014) Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. BMC Genomics 15: 954. IF 3.867 Citations 6.

 

Choi, I., Kim, R., Lim, H.W., Kaestner, K.H., Won, K.J. (2014) 5-hydroxymethylcytosine represses the activity of enhancers in embryonic stem cells: a new epigenetic signature for gene regulation. BMC genomics 15, 670. IF 3.867 Citations 8.

 

Choi, J., Liao, X., Stothard, P., Chung, W., Jeon, H., Miller, S.P., Choi, S., Lee, J., Yang, B., Lee, K., Han, K., Kim, H., Jeong, D., Oh, J., Kim, N., Kim, T., Lee, H., Lee, S. (2014) Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing. PLoS ONE 9: e101127. IF 3.54 Citations 15.

 

Daetwyler, H.D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brøndum, R.F.,  Liao, X., Djari, A., Rodriguez, S.C., Grohs, C., Esquerré, D., Bouchez, O., Rossignol, M.N., Klopp, C., Rocha, D., Fritz, S., Eggen, A., Bowman, P.J., Coote, D., Chamberlain, A.J., Anderson, C., VanTassell, C.P., Hulsegge, I., Goddard, M.E., Guldbrandtsen, B., Lund, M.S., Veerkamp, R.F., Boichard, D.A., Fries, R., Hayes, B.J. (2014) Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics 46: 858-865. IF 31.616 Citations 178.

 

David, J., Barkema, H.W., Guan, L., De Buck, J. (2014) Gene-expression profiling of calves 6 and 9 months after inoculation with Mycobacterium avium subspecies paratuberculosis. Veterinary Research 45: 96. IF 3.765 Citations 5.

 

David, J., Barkema, H.W., Mortier, R., Gosh, S., Guan, L.L., De Buck, J. (2014) Gene expression profiling and putative biomarkers of calves 3 months after infection with Mycobacterium avium subspecies paratuberculosis. Veterinary Immunology and Immunopathology 160: 107-117. IF 1.664 Citations 10.

 

Ekine-Dzivenu, C., Chen, L., Vinsky, M., Aldai, N., Dugan, M.E.R., McAllister, T.A., Wang, Z., Okine, E., Li, C. (2014) Estimates of genetic parameters for fatty acids in brisket adipose tissue of Canadian commercial crossbred beef steers. Meat Science 96: 1517-1526. IF 2.801 Citations 8.

 

Engle, T., Jobman, E., Moural, T., McKnite, A., Bundy, J., Barnes, S., Davis, E., Galeota, J., Burkey, T., Plastow, G., Kachman, S., Ciobanu, D. (2014) Variation in time and magnitude of immune response and viremia in experimental challenges with Porcine circovirus 2b. BMC Veterinary Research 10: 286. IF 1.377 Citations 5.

 

Graham, M., Van Domselaar, G., Stothard, P. (2014) Prokaryotic genome sequencing and assembly. In: Tastan Bishop O (ed) Bioinformatics and Data Analysis in Microbiology: Caister Academic Press, Norfolk, UK, pp.25-49.

 

Haisan, J., Sun, Y.Q., Guan, L.L., Beauchemin, K., Iwaasa, A., Duval, S., Barreda, D., Oba, M. (2014) The effects of feeding 3-nitrooxypropanol on methane emissions and productivity of Holstein cows in mid lactation. Journal of Dairy Science 97: 3110-3119. IF 2.408 Citations 27.

 

Holdstock, J., Aalhus, J.L., Uttaro, B.A., López-Campos, Ó., Larsen, I.L., Bruce, H.L. (2014) The impact of ultimate pH on muscle characteristics and sensory attributes of the longissimus thoracis within the dark cutting (Canada B4) beef carcass grade. Meat Science 98: 842-849. IF 2.801 Citations 2.

 

Jamrozik, J., Miller, S.P. (2014) Genetic evaluation of calving ease in Canadian Simmentals using birth weight and gestation length as correlated traits. Livestock Science 162: 42-49. IF 1.293 Citations 8.

 

Jiao, J., Lu, Q., Tan, Z., Guan, L., Zhou, C., Tang, S., Han, X. (2014) In vitro evaluation of effects of gut region and fiber structure on the intestinal dominant bacterial diversity and functional bacterial species. Anaerobe 28: 168-77. IF 2.424 Citations 4.

 

Jin, W., Ibeagha-Awemu, E.M., Liang, G., Beaudoin, F., Zhao, X., Guan, L.L. (2014) Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. BMC Genomics 15: 181. IF 3.867 Citations 28.

 

Karisa, B., Moore, S., Plastow, G. (2014) Analysis of biological networks and biological pathways associated with residual feed intake in beef cattle. Animal Science Journal 85: 374-387. IF 1.045 Citations 7.

 

Karisa, B.K, Thomson, J., Wang, Z., Li, C., Montanholi, Y., Miller, S.P., Moore, S.S., Plastow, G.S. (2014) Plasma metabolites associated with residual feed intake and other productivity performance traits in beef cattle. Livestock Science 165: 200-211. IF 1.293 Citations 5.

 

Khansefid, M., Pryce, J.E., Bolormaa, S., Miller, S. P., Wang, Z., Li, C., Goddard, M.E. (2014) Estimation of genomic breeding values for residual feed intake in a multi-breed cattle population. Journal of Animal Science 92: 3270-3283. IF 2.014 Citations.

 

Kommadath, A., Bao, H., Arantes, A.S., Plastow, G.S., Tuggle, C.K., Bearson, S.M.D., Guan, L.L., Stothard, P. (2014) Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding. BMC Genomics 15: 452. IF 3.867 Citations 19.

 

Ladinig, A., Foxcroft, G., Ashley, C., Lunney, J.K., Plastow, G., Harding, J.C.S. (2014) Birth weight, intrauterine growth retardation and fetal susceptibility to porcine reproductive and respiratory syndrome virus. PLoS ONE 9: e109541. IF 3.54 Citations 6.

 

Ladinig, A., Lunney, J.K., Souza, C.J.H., Ashley, C., Plastow, G., Harding, J.C.S. (2014) Cytokine profiles in pregnant gilts experimentally infected with porcine reproductive and respiratory syndrome virus and relationships with viral load and fetal outcome. Veterinary Research 45: 113. IF 2.928 Citations 9.

 

Ladinig, A., Wilkinson, A., Ashley, C., Detmer, S.E., Lunney, J.K., Plastow, G., Harding, J.C.S. (2014) Variation in fetal outcome, viral load and ORF5 sequence mutations in a large scale study of phenotypic responses to late gestation exposure to type 2 porcine reproductive and respiratory syndrome virus. PLoS ONE 9: e96104. IF 3.54 Citations 17.

 

Liang, Q., Malmuthuge, N., McFadden, T.B., Bao, H., Griebel, P.J., Stothard, P., Guan, L.L. (2014) Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life. PLoS ONE 9: e92592. IF 3.54 Citations 23.

Liao, X., Bao, H., Meng, Y., Plastow, G., Moore, S., Stothard, P. (2014) Sequence, structural and expression divergence of duplicate genes in the bovine genome. PLoS ONE 9: e102868. IF 3.54 Citations 3.

 

Liu, J., Wang, J., Zhu, W., Pu, Y., Guan, L.L., Liu, J-X. (2014) Monitoring the rumen pectinolytic bacteria Treponema saccharophilum using real-time PCR. FEMS Microbiology Ecology 87: 576-585. IF 3.53 Citations 5.

 

López-Campos, Ó., Aalhus, J.L., Galbraith, J., Larsen, I. L., Juárez, M., Uttaro, B., Robertson, W. M. (2014) The relation of carcass physiological maturity to meat quality in the Canadian Bison Grading System. Canadian Journal of Animal Science 94: 55-62. IF 0.724 Citations 3.

 

López-Campos, Ó.,Aalhus, J.L., Prieto, N., Larsen, I. L., Juárez, M., Basarab, J.A. (2014) Effects of production system and growth promotants on the physiological maturity scores in steers. Canadian Journal of Animal Science 91: 607-617. IF 0.724 Citations 0.

 

Malmuthuge, N., Griebel, P.J., Guan, L.L. (2014) Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tract of pre-weaned calves. Applied and Environmental Microbiology 80: 2021-2028. IF 3.823 Citations 33.

 

Meale, S., Romao, J., McAllister, T., Guan, L.L., Alex, C. (2014) Effect of diet on microRNA expression in ovine subcutaneous and visceral adipose tissues. Journal of Animal Science 92: 3328-37. IF 2.014 Citations 7.

 

Mewis, J., Xu, S., Zuidhof, M., Guan, L.L. (2014) Research note: methodology for high quality RNA extraction from poultry whole blood for further gene expression analysis. British Poultry Science 55: 194-196. IF 0.933 Citations 2.

 

Miar, Y., Plastow, G.S, Bruce, H.L., Moore, S.S., Durunna, O.N., Nkrumah, J.D., Wang, Z. (2014) Estimation of genetic and phenotypic parameters for ultrasound and carcass merit traits in crossbred beef cattle. Canadian Journal of Animal Science 94: 273-280. IF 0.724 Citations 6.

 

Miar, Y., Plastow, G., Bruce, H., Moore, S., Manafiazar, G., Kemp, R., Charagu, P., Huisman, A., van Haandel, B., Zhang, C., McKay, R., Wang, Z. (2014) Genetic and phenotypic correlations between performance traits with meat quality and carcass characteristics in commercial crossbred pigs. PLoS ONE 9: e110105. IF 3.54 Citations 6.

 

Miar, Y., Plastow, G.S., Moore, S.S., Manafiazar, G., Charagu, P., Kemp, R.A., Van Haandel, B., Huisman, A.E., Zhang, C.Y., McKay, R.M., Bruce, H.L., Wang, Z. (2014) Genetic and phenotypic parameters for carcass and meat quality traits in commercial crossbred pigs. Journal of Animal Science 92: 2869-2884. IF 2.014 Citations 8.

 

Omana, D.A., Goddard, E., Plastow, G.S., Janz, J., Ma, L., Anders, S., Moore, S.S., Bruce, H.L. (2014) Influence of on-farm production practices on sensory and technological quality characteristics of pork loin. Meat Science 96: 315-320. IF 2.801 Citations 4.

 

Plastow, G., and Bruce, H. (2014) Modern genetics and genomic technologies and their application in the Meat Industry: red meat animals, poultry.  p37-42. In The Encyclopedia of Meat Sciences, 2nd Edition. Ed. M. Dikeman and C. Devine. Academic Press, London. eBook ISBN: 9780123847348. IF n/a.

 

Prieto, N., López-Campos, Ó., Zijlstra, R., Uttaro, B., Aalhus, J.L. (2014) Discrimination of beef dark cutters using visible and near infrared reflectance spectroscopy. Canadian Journal of Animal Science 94: 445-454. IF 0.724 Citations 5.

 

Romao, J.M., He, M.L., McAllister, T.A., Guan, L.L. (2014) Effect of age on bovine subcutaneous fat proteome: molecular mechanisms of physiological variations during beef cattle growth. Journal of Animal Science 92: 3316-3327. IF 2.014 Citations 5.

 

Romao, J.M., Jin, W., He, M., McAllister, T., Guan, L.L. (2014) MicroRNAs in bovine adipogenesis: genomic context, expression and function. BMC Genomics 15: 137. IF 3.867 Citations 21.

 

Romero-Perez, A., Okine, E.K., McGinn, S.M., Guan, L.L., Oba, M., Duval, S.M., Beauchemin, K.A. (2014) The potential of 3-nitrooxipropanol to lower enteric methane emissions from beef cattle. Journal of Animal Science 92: 4682-93. IF 2.014 Citations 23.

 

Rothschild, M.F., Plastow, G.S. (2014) Applications of genomics to improve livestock in the developing world. Livestock Science 166: 76-83. IF 1.293 Citations 10.

 

Serão, N.V.L, Matika, O., Kemp, R.A., Harding, J.C.S., Bishop, S.C., Plastow, G.S., Dekkers, J.C.M. (2014) Genetic analysis of reproductive traits and antibody response in a PRRS outbreak herd. Journal of Animal Science 92: 2905-2921. IF 2.014 Citations 18.

 

Tang, G., Liu, J., Xue, J., Yang, R., Liu, T., Zeng, Z., Jiang, A., Jiang, Y., Li, M., Zhu, L., Bai, L., Shuai, S., Wang, Z., Li, X. (2014) Optimizing selection strategies of genomic selection in swine breeding program based on a dataset simulated. Livestock Science 166: 111-120. IF 1.293 Citations 1.

 

Tullio, R.R., Juárez, M., Larsen, I.L., Basarab, J.A., Aalhus, J.L. (2014) Short Communication: Influence of some meat quality parameters on beef tenderness. Canadian Journal of Animal Science 94: 455-458. IF 0.724 Citations 1.

 

Van Domselaar, G., Graham, M., Stothard, P. (2014) Prokaryotic genome annotation. In: Tastan Bishop O (ed) Bioinformatics and Data Analysis in Microbiology: Caister Academic Press, Norfolk, UK, pp. 81-111.

 

Ventura, R.V., Lu, D., Schenkel, F.S., Wang, Z., Li, C., Miller, S.P. (2014) Impact of reference population on accuracy of imputation from 6K to 50K SNP chips in purebred and crossbreed beef cattle. Journal of Animal Science 92: 1433-1444. IF 2.014 Citations 13.

 

Wood, K.M., Montanholi, Y., Fitzsimmons, C., Miller, S., McBride, B., Swanson, K. (2014) Characterization and evaluation of residual feed intake measured in mid- to late-gestation mature beef cows and relationships with circulating serum metabolites and linear body measurements. Canadian Journal of Animal Science 94: 499-508. IF 0.724 Citations 0.

 

Xiang, R., Lee, A.M.C., Eindorf, T., Javadmanesh, A., Ghanipoor-Samami, M., Gugger, M., Fitzsimmons, C.J., Kruk, Z.A., Pitchford, W.S., Leviton, A.J., Thomsen, D.A., Beckman, I., Anderson, G.I., Burns, B.M., Rutley, D.L., Xian, C.J., Hiendleder, S. (2014) Widespread differential maternal and paternal genome effects on fetal bone phenotype at mid-gestation. Journal of Bone and Mineral Research 29: 2392-2404. IF 5.622 Citations 1.

 

Yang, X.Q., Youssef, M.K., Gill, C.O., Badoni, M., López-Campos, Ó. (2014) Effects of meat pH on growth of 11 species of psychrotolerant clostridia on vacuum packaged beef and blown pack spoilage of the product. Food Microbiology 39: 13-18. IF 3.682 Citations 5.

 

Zhang, C.Y., Wang, Z., Bruce, H.L., Janz, J., Goddard, E., Moore, S., Plastow, G.S. (2014) Associations between single nucleotide polymorphisms in 33 candidate genes and meat quality traits in commercial pigs. Animal Genetics 45: 508-516. IF 1.779 Citations 6.

 

Zhou, C., Dobrinsky, J., Tsoi, S., Foxcroft, G.R., Dixon, W.T., Stothard, P., Verstegen, J., Dyck, M.K. (2014) Characterization of the altered gene expression profile in early porcine embryos generated from parthenogenesis and somatic cell chromatin transfer. PLoS ONE 9: e91728. IF 3.54 Citations 7.

 

Zhou, M., Grebiel, P., Guan, L.L. (2014) Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves. Gut Microbes 5: 628-638. IF ? Citations 1.