2019

Akanno, EC., Ekine-Dzivenu, C., Chen, L., Vinsky, M., Abo-Ismail, MK., MacNeil ,MD., Plastow, G., Basarab, J., Li, C., & Fitzsimmons, C. (2019) Evaluation of a genome-based sorting system for feeder cattle. Journal of Animal Science 97(3):1066-1075.

Añez-Osuna, F., Penner, GB., Campbell, J., Damiran, D., Dugan, MER., Fitzsimmons, CJ., Jefferson, PG., McKinnon, JJ., Lardner, HA. (2019) Effects of postpartum fat supplementation and source on the reproductive performance of lactating young beef cows grazing cool-season grass pastures. Applied Animal Science 35(2):185-198.

Añez-Osuna, F., Penner, GB., Campbell, J., Dugan ,MER., Fitzsimmons, CJ., Jefferson, PG., Lardner, HA., McKinnon, JJ. (2019) Level and source of fat in the diet of gestating beef cows: I. Effects on the prepartum performance of the dam and birth weight of the progeny. Journal of Animal Science 97(7):3103-3119.

Añez-Osuna, F., Penner, GB., Campbell, J., Dugan, MER., Fitzsimmons, CJ., Jefferson, PG., Lardner, HA., McKinnon, JJ. (2019) Level and source of fat in the diet of gestating beef cows. II. Effects on the postpartum performance of the dam and the progeny. Journal of Animal Science 97(7):3120-3141.

Bolormaa, S., Chamberlain, AJ., Khansefid, M., Stothard, P., Swan, AA., Mason, B., Prowse-Wilkins, CP., Duijvesteijn, N., Moghaddar, N., van der Werf, JH., Daetwyler, HD., MacLeod, IM. (2019) Accuracy of imputation to whole-genome sequence in sheep. Genet Sel Evol. 51(1):17 doi:10.1186/s12711-018-0443-5. PubMed

Bruce, H. L., and Roy, B. C. (2019) Production factors affecting the contribution of collagen to beef toughness. Journal of Animal Science 97: 2270-2278.

Butty, AM., Sargolzaei, M., Miglior, F., Stothard, P., Schenkel, FS., Gredler-Grandl, B., Baes, CF. (2019) Optimizing selection of the reference population for genotype imputation from array to sequence variants. Front Genet. 31(10):510 doi: 10.3389/fgene.2019.00510. PubMed

Farid, M., Yang, R-C., Kebede, B., Rahman, H. (2019) Evaluation of Brassica oleracea accessions for resistance to Plasmodiophora brassicae and identification of genomic regions associated with resistance. Genome 63(2):91-101.

Hameed, A., Shahina, M., Lai, W., Stothard, P., Young, L., Lin, S., Young, C. (2019) Draft genome sequence reveals co-occurrence of multiple antimicrobial resistance and plant probiotic traits in rice root endophytic strain Burkholderia sp. LS-044 affiliated to Burkholderia cepacia complex. J Glob Antimicrob Resist. 20:28-30 doi: 10.1016/j.jgar.2019.11.017. PubMed

Jaswal, R., Pathak, A., Edwards, B., Lewis, R., Seaman, J., Stothard, P., Krivushin, K., Blom, J., Rupp, O., Chauhan, A. (2019) Metagenomics-guided survey, isolation, and characterization of uranium resistant microbiota from the Savannah River site, USA. Genes 10:5 doi: 10.3390/genes10050325. PubMed

Jiu, Z., Roy, B.C., Das, C., Wismer, W.V., Juárez, M., Fitzsimmons, C., Li, C., Plastow, G., Aalhus, J.L., Bruce, H.L. (2020) Meat and sensory quality of major muscles from Angus, Charolais, and Angus crossbred steers with high and low residual feed intake. Can. J. Anim. Sci. 100:140–153 dx.doi.org/10.1139/cjas-2019-0012.

Johnson, C., Fitzsimmons, C., Colazo, M, Li C., Kastelic, J., Thundathil, J. (2019) Impacts of residual feed intake and pre-natal diet on reproductive potential of bulls. Animal Production Science 59(10):1827-1836.

Ju, T., Kong, JY., Stothard, P., Willing, BP. (2019) Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota. ISME J. 13(6):1520-1534 doi: 10.1038/s41396-019-0364-5. PubMed

Kommadath, A., Grant, JR., Krivushin, K., Butty, AM., Baes, CF., Carthy, TR., Berry, DP., Stothard, P. (2019) A large interactive visual database of copy number variants discovered in taurine cattle. GigaScience 8(6) doi: 10.1093/gigascience/giz073. PubMed

Kubota, H., Yang, R-C., Iqbal, M., Spaner, D. (2019) There are Different Pathways to Stable Spring Wheat Grain Yield and Nitrogen Utilization Efficiency in Conventional and Organically-Managed Systems. Agronomy Journal 111:2370-2377.

Li, F., Hitch, TCA., Chen, Y., Creevey, CJ., Guan, LL. (2019) Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle. Microbiome. 7(1):6. https://doi.org/10.1186/s40168-019-0618-5.  doi: 10.1186/s40168-019-0618-5. PubMed

Li, F., Li, C., Chen, Y., Liu, J., Zhang, C., Irving, B., Fitzsimmons, C., Plastow, G., Guan, LL. (2019) Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle. Microbiome. 7(1):92. doi: 10.1186/s40168-019-0699-1.

Ma, T., O’Hara, É., Song, Y., Fischer, AJ., He, Z., Steele, MA., Guan, LL. (2019) Altered mucosa-associated microbiota in the ileum and colon of neonatal calves in response to delayed first colostrum feeding. J Dairy Sci. 102(8):7073-7086. doi: 10.3168/jds.2018-16130.

Mahmood, S., Dixon, W. T., and Bruce, H. L. (2019) Cattle production practices and the incidence of dark cutting beef. Meat Science 157:107873.

Malmuthuge, N., Liang, G., Griebel, PJ., Guan, LL. (2019) Taxonomic and functional composition of the small intestinal microbiome in neonatal calves provide a framework for understanding early life gut health. Appl Environ Microbiol. 85(6). pii: e02534-18. doi: 10.1128/AEM.02534-18 PubMed

Malmuthuge, N., Liang, G., Guan LL. (2019) Regulation of rumen development in neonatal ruminants through microbial metagenomes and host transcriptomes. Genome Biology. 20(1):172. doi: 10.1186/s13059-019-1786-0.

Mukiibi, R., Vinsky, M., Keogh, K., Fitzsimmons, C., Stothard, P., Waters, SM., Li, C. (2019) Liver transcriptome profiling of beef steers with divergent growth rate, feed intake, or metabolic body weight phenotypes. Journal of Animal Science 97(11):4386-4404.

Munyaka, PM., Kommadath, A., Fouhse, J., Wilkinson, J., Diether, N., Stothard, P., Estellé, J., Rogel-Gaillard, C., Plastow, G., Willing, BP. (2019) Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae. Vaccine 37:1743-1755 doi: 10.1016/j.vaccine.2019.02.016. PubMed

Neves, ALA., Chen, Y., Cao, K-A L., Mandal, S., Sharpton, TJ., McAllister, T. and Guan, LL. (2019) Taxonomic and functional assessment using metatranscriptomics reveals the effect of Angus cattle on rumen microbial signatures. Animal 1:14. doi: 10.1017/S1751731119002453.

Nikzad, A., Kebede, B., Pinzon, J., Bhavikkumar, J., Yang, R-C., Rahman, H. (2019) Potential of the C Genome of Different Variants of Brassica oleracea for the Improvement of Agronomic and Seed Quality Traits of B. napus Canola. Crop Science 59:2608-2620.

Peters, DL., McCutcheon, JG., Stothard, P., Dennis, JJ. (2019) Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion. BMC Genomics 20:300 doi: 10.1186/s12864-019-5674-5. PubMed

Popoola, I., Bruce, H. L., McMullen, L. M., Wismer, W. V. (2019) Consumer sensory comparisons among beef, horse, elk and bison using Preferred Attributes Elicitation and Check All That Apply Methods. Journal of Food Science 84: 3009-3017.

Puente, J., Samanta, S. S., and Bruce, H. L. (2019) Bovine m. longissimus thoracis meat quality differences due to Canada quality grade. Meat Science 155:43-49.

Russell, T., Cullingham, C., Kommadath, A., Stothard, P., Herbst, A., Coltman, D. (2019) Development of a novel mule deer genomic assembly and species-diagnostic SNP panel for assessing introgression in mule deer, white-tailed deer, and their interspecific hybrids. G3 (Bethesda) 9(3):911-919  doi: 10.1534/g3.118.200838. PubMed

Song, Y., Malmuthuge, N., Li F, Guan, LL. (2019) Colostrum feeding shapes the hindgut microbiota of dairy calves during the first 12 h of life. FEMS Microbial Ecology 95(1). doi: 10.1093/femsec/fiy203.

Strydhorst, SM., Yang, R-C., Gill, KS., Bowness, R. (2019) Inter-row stubble seeding and plant growth regulators to improve field pea standability and production. Canadian Journal of Plant Science  99(2):184-198.

Sun, HZ., Chen, Y., Guan, LL. (2019) MicroRNA expression profiles across different tissues in cattle. Scientific Data 6: 190013  doi: 10.1038/sdata.2019.13. (IF, 5.305 (2017))

Sun, HZ., Plastow, G., Guan, LL. (2019) Advances and challenges in application of feedomics to improve dairy cow production and health. J Dairy Sci. 102(7):5853-5870. doi: 10.3168/jds.2018-16126.

Sun, HZ., Zhou, M., Wang, O., Chen, Y., Liu, JX., Guan, LL. (2019) Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. Bioinformatics36(8):2530–2537  doi: 10.1093/bioinformatics/btz951

Villot, C., Ma, T., Renaud, DL Ghaffari, MH., Gibson, DJ., Skidmore, A., Chevaux, E., Guan, LL., Steele, MA. (2019) Saccharomyces cerevisiae boulardiiCNCM I-1079 affects health, growth and fecal microbiota in milk-fed veal calves. JDS. J Dairy Sci. 102(8):7011-7025. doi: 10.3168/jds.2018-16149.

Zhi, S., Banting, G., Stothard, P., Ashbolt, NJ., Checkley, S., Meyer, K., Otto, S., Neumann, N. (2019) Evidence for the evolution, clonal expansion and global dissemination of water treatment-resistant naturalized strains of Escherichia coli in wastewater. Water Res 156:208-222 doi:10.1016/j.watres.2019.03.024.